I had a possibly similar problem, but mine didn't occur until after the edit window was open for 15-18 minutes. Thanks to some fancy sleuthing by John Mitchell, he suggested that I set the "Page State Persistence" to "Page" and not to "Memory" as I had set it. See below.
Since making that change, and perhaps a few others (you can find John's recommendations for DotNetNuke performance settings in his fine forums at Snapsis.com), I haven't seen that problem again.
So ... check your performance settings ...