I use the WAP method of developing modules, the following would only apply to WAP because the WSP method already includes web.config.  Long story short, when I add certain controls (I've noticed it the most with the ASP.NET AJAX Control ToolKit) to my ASCX files and/or open them up to edit later, Visual Studio thinks it is being really nice and generates a web.config on my behalf.  Of course I really don't want it there, however, and have to delete it before I can pull the module up in my portal.  If I leave the ASCX up it adds the file over and over again so long as I keep deleting it.  Waaaaay annoying.

Anybody else have this problem and know how to resolve it; how to tell VS to stop being so "nice"?

Sorry I didn't reply until now... that little workaround works great.  Thanks!